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| The marker genes employed, and products | ||
| Mostly assembled from: | ||
| Wu & Eisen (2008): Genome Biology 9, R151 | ||
| Wu et al. (2013): Plos One 8, e77033 | ||
| Parks et al. (2015): Genome Research 25, 1043-1055 | ||
| http://help.bioiplug.com/ubcg-gene-set/ | ||
| gene | product | length |
| (aa) | ||
| alaS | Threonyl and Alanyl tRNA synthetase | 835 |
| clpX | ATP-dependent Clp protease ATP-binding subunit | 414 |
| coaE | Dephospho-CoA kinase | 176 |
| cysS | Cysteine-tRNA ligase | 477 |
| desC | Delta-9 acyl-lipid desaturase | 289 |
| efp | Elongation factor P | 191 |
| folP | Dihydropteroate synthase | 273 |
| frr | Ribosome-recycling factor | 171 |
| gmk | Guanylate kinase | 177 |
| hemA | Glutamyl-tRNA reductase | 438 |
| hemE | Uroporphyrinogen decarboxylase | 337 |
| hisS | Histidine-tRNA ligase | 460 |
| infC | Translation initiation factor IF-3 | 142 |
| ksgA | Ribosomal RNA small subunit methyltransferase A | 256 |
| mraW | 16S rRNA methyltransferase | 248 |
| ndhG | NADH dehydrogenase subunit J | 201 |
| nusA | Transcription termination protein | 368 |
| nusB | Transcription antitermination factor | 207 |
| nusG | Transcription termination/antitermination protein | 188 |
| pdhA | Pyruvate dehydrogenase E1 component subunit | 294 |
| pgk | Phosphoglycerate kinase | 395 |
| pheS | Phenylalanine-tRNA ligase, alpha subunit | 337 |
| pheT | Phenylalanine–tRNA ligase beta subunit | 785 |
| plsX | Fatty acid/phospholipid synthesis protein | 244 |
| purM | Phosphoribosylformylglycinamidine cyclo-ligase | 332 |
| pyrG | CTP synthase | 101 |
| rbcS | Ribulose bisphosphate carboxylase, small chain | 96 |
| recA | Recombinase A | 325 |
| recN | DNA repair protein | 541 |
| recR | Recombination protein | 198 |
| ribF | Bifunctional riboflavin kinase | 282 |
| rimM | Ribosome maturation factor | 165 |
| rplA | Ribosomal protein L1p/L10e family | 226 |
| rplB | Ribosomal protein L2 | 274 |
| rplC | Ribosomal protein L3 | 206 |
| rplD | Ribosomal protein L4/L1 family | 178 |
| rplE | Ribosomal protein L5 | 178 |
| rplF | Ribosomal protein L6 | 170 |
| rplI | Ribosomal protein L9 | 149 |
| rplK | Ribosomal protein L11 | 142 |
| rplL | Ribosomal protein L7/L12 | 111 |
| rplM | Ribosomal protein L13 | 142 |
| rplN | Ribosomal protein L14p/L23e | 134 |
| rplP | Ribosomal protein L16p/L10e | 136 |
| rplQ | Ribosomal protein L17 | 117 |
| rplR | Ribosomal protein L18 | 94 |
| rplS | Ribosomal protein L19 | 113 |
| rplT | Ribosomal protein L20 | 117 |
| rplU | Ribosomal protein L21 | 103 |
| rplV | Ribosomal protein L22p/L17e | 107 |
| rpmA | Ribosomal protein L27 | 82 |
| rpoA | DNA-directed RNA polymerase alpha subunit | 288 |
| rpsB | Ribosomal protein S2 | 230 |
| rpsC | Ribosomal protein S3 | 210 |
| rpsD | Ribosomal protein S4 | 207 |
| rpsE | Ribosomal protein S5 | 160 |
| rpsG | Ribosomal protein S7p/S5e | 157 |
| rpsH | Ribosomal protein S8 | 133 |
| rpsI | Ribosomal protein S9/S16 | 124 |
| rpsJ | Ribosomal protein S10 | 103 |
| rpsK | Ribosomal protein S11 | 122 |
| rpsL | Ribosomal protein S12/S23 | 124 |
| rpsM | Ribosomal protein S13 | 118 |
| rpsO | Ribosomal protein S15 | 90 |
| rpsP | Ribosomal protein S16 | 81 |
| rpsQ | Ribosomal protein S17 | 74 |
| rpsS | Ribosomal protein S19 | 85 |
| ruvA | Holliday junction DNA helicase | 196 |
| ruvB | Holliday junction DNA helicase | 320 |
| sat | ATP sulfurylase | 399 |
| secY | Protein translocase subunit | 396 |
| serS | Serine-tRNA ligase | 423 |
| smpB | SsrA-binding protein | 140 |
| thiE | Thiamine-phosphate pyrophosphorylase | 373 |
| tig | Trigger factor | 365 |
| truB | TruB family pseudouridylate synthase | 217 |
| tsf | Elongation factor Ts | 161 |
| uvrB | UvrABC system protein B | 675 |
| zwf | Glucose-6-phosphate 1-dehydrogenase | 522 |