cyanobacterial phylogeny

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EXCLUDED GENOMES (COMPLETE AND WGS)

Not of bacterial origin:







Hassallia byssoidea

VB512170

JTCM00000000.1


Mastigocoleus testarum

BC008

AXAQ00000000


Cyanobacteria bacterium

CONCOCT.2.5kb 103

JAIEMQ00000000

metagenome



Not cyanobacterial (described by CheckM as bacterial and not placed in the cyanobacterial clade by pplacer) or

presumed chimers (described as bacterial by CheckM but placed into the bacterial tree in unlikely positions

by pplacer) having segments of both cyanobacterial and bacterial origin:






Aphanocapsa montana

BDHKU210001

JTJD00000000.1


Fischerella ambigua

UTEX 1903

R. Viswanathan


Nodosilinea sp.

LEGE 07088

JADEWX000000000


Nodularia sp.

LEGE 06071

JADEWH000000000


Pleurocapsa sp.

SU 196 0

JAAUUV000000000

metagenome


Prochlorococcus sp.

MED-G72

QOPO00000000

metagenome


Prochlorococcus sp.

MED-G73

QOPN00000000

metagenome


Prochlorococcus sp.

scB245a 518D8

JFNB00000000


Scytonema millei

VB511283

JTJC00000000.1


Synechococcus sp.

SB0666 bin 14

VXTW00000000

metagenome


Synechococcus sp.

SB0675 bin 6

VYDJ00000000

metagenome


Synechococcus sp.

SB0668 bin 13

VXWH00000000

metagenome


Synechococcus sp.

SB0668 bin 15

VXWJ00000000

metagenome


Synechococcus sp.

SB0662 bin 14

VXNS00000000

metagenome


Synechococcus

Bin 28

Ga0113640


Synechococcus

Bin 27

Ga0113638


Cyanobacterium

TDX16

NDGV00000000


Oscillatoriales cyanobacterium

MTP1

LNAA00000000







Incomplete (contain fewer than 77 of 79 core marker genes a gene

being considered as present only if the query cover is greater than 40%):





Markers

Acaryochloris sp.

CRU 2 0

JAAUOM000000000

metagenome

74

Acaryochloris sp.

RU 4 1

JAAURR000000000

metagenome

73

Acaryochloris sp.

SU 5 25

JAAUVC000000000

metagenome

37

Aetokthonos hydrillicola

CCALA 1050

JAAKGC000000000

75

Aetokthonos hydrillicola

Thurmond2011

JAALHA00000000

60

Alkalinema sp.

FL-bin-369

JACMPV000000000

metagenome

42

Alkalinema sp.

RL 2 19

JAAUPX000000000

metagenome

29

Anabaena sp.

54 AM 902

OMJF00000000

metagenome

59

Aphanizomenon flos-aquae

2012/KM1/D3

JSDP00000000

76

Aphanocapsa feldmannii

277cI

SRMN00000000

metagenome

70

Aphanothece sp.

CMT-3BRIN-NPC111

JAHHGU000000000

metagenome

76

Arthrospira maxima

CS-328

ABYK00000000

73

Arthrospira sp.

O9.13F

PKGD00000000

72

Arthrospira sp.

9oJG1QGf0v_bin.3

CALTXI000000000

metagenome

67

Baaleninema simplex

PCC 7105

ANFQ00000000

75

Brasilonema bromeliae

SPC951

QMEB00000000

75

Brasilonema sp.

CT11

JABXYX000000000

76

Calothrix sp.

CSU 2 0

JAAUPE000000000

metagenome

76

Calothrix sp.

SM1 5 4

JAAUTQ000000000

metagenome

40

Calothrix sp.

SM1 7 51

JAAUTW000000000

metagenome

33

Candidatus Aurora vandensis

MP9P1

JAAXLU000000000

metagenome

76

Candidatus Atelocyanobacterium thalassa

MetaBAT-v2.12.1

CAJWSD000000000

metagenome

70

Candidatus Atelocyanobacterium thalassa

UBA4158

DFVO00000000

metagenome

76

Candidatus Atelocyanobacterium thalassa

ALOHA=UCYN-A1

CP001842

metagenome

76

Candidatus Synechococcus spongiarum

isolate 1

FITM00000000

63

Candidatus Synechococcus spongiarum

LMB bulk10D

MWLG00000000

39

Candidatus Synechococcus spongiarum

LMB bulk10E

MWLF00000000

12

Candidatus Synechococcus spongiarum

LMB bulk15M

MWLD00000000

metagenome

71

Candidatus Synechococcus spongiarum

LMB bulk15N

MWLE00000000

metagenome

49

Candidatus Synechococcus spongiarum

SH4

JENA00000000

metagenome

73

Cyanobium sp.

49614_E6

JAJTFP000000000

metagenome

69

Cyanobium sp.

BSH.17

JALQSW000000000

metagenome

33

Chamaesiphon sp.

CSU 1 12

JAAUOX000000000

metagenome

7

Chamaesiphon sp.

isolate WC-16

JAGVCD000000000

metagenome

53

Chlorogloea purpurea

SAG 13.99

JADQBB000000000

68

Coleofasciculus sp.

Co-bin14

JACVRQ000000000

metagenome

56

Coleofasciculus sp.

C3-bin4

JACVRI000000000

metagenome

47

Coleofasciculus sp.

S288

JAIUYC000000000

metagenome

53

Crocosphaera sp.

DT 26

JABSPE000000000

metagenome

72

Chroococcales cyanobacterium

metabat2.561

RPQW00000000

metagenome

34

Chroococcidiopsidaceae cyanobacterium

CP BM ER R8 30

JAFASY000000000

metagenome

74

Chroococcidiopsidaceae cyanobacterium

CP BM RX 35

JAFAVL000000000

metagenome

66

Chroococcus sp.

CMT-3BRIN-NPC107

JAHHGY000000000

metagenome

75

Cyanobacteria bacterium

813 bin36

JAHWKX000000000

metagenome

63

Cyanobacteria bacterium

13-1-20CM

MNIV00000000

metagenome

9

Cyanobacteria bacterium

A61_33.fa

JAJVYR000000000

metagenome

68

Cyanobacteria bacterium

AG-640-J16 JGI

JGI

32

Cyanobacteria bacterium

B24_59.fa

JAJWGZ000000000

metagenome

70

Cyanobacteria bacterium

B43_68.fa

JAJWOB000000000

metagenome

69

Cyanobacteria bacterium

B48_14.fa

JAJWQX000000000

metagenome

68

Cyanobacteria bacterium

B57_57.fa

JAJWTZ000000000

metagenome

66

Cyanobacteria bacterium

B59_41.fa

JAJWUK000000000

metagenome

70

Cyanobacteria bacterium

B62_33.fa

JAJWVH000000000

metagenome

62

Cyanobacteria bacterium

bin 100 PROKKA

JAFNEQ000000000

metagenome

43

Cyanobacteria bacterium

bin.275

JABMNF000000000

metagenome

68

Cyanobacteria bacterium

bin.51

JABMPN000000000

metagenome

84

Cyanobacteria bacterium

C8_41.fa

JAJXQM000000000

metagenome

61

Cyanobacteria bacterium

C31_37_sub.fa

JAJXNM000000000

metagenome

58

Cyanobacteria bacterium

Co-bin13

JACVRP000000000

metagenome

39

Cyanobacteria bacterium

Co-bin8

JACVSF000000000

metagenome

49

Cyanobacteria bacterium

CONCOCT.2.5kb 148

JAIEMW00000000

metagenome

76

Cyanobacteria bacterium

CSSed11 75

PWXB00000000

metagenome

69

Cyanobacteria bacterium

CYA N2 1

RHKP00000000

metagenome

69

Cyanobacteria bacterium

DASTOOL.1kb 042

JAIENO00000000

metagenome

68

Cyanobacteria bacterium

DS2.008

PNLS00000000

metagenome

16

Cyanobacteria bacterium

DS2.3.42

PNLN00000000

metagenome

54

Cyanobacteria bacterium

DS3.002

PNLJ00000000

metagenome

22

Cyanobacteria bacterium

CG 2015-02 32

JAACPM00000000

74

Cyanobacteria bacterium

FK_Sedi_A_Bin.218

JAMCSH000000000

metagenome

53

Cyanobacteria bacterium

GSL.Bin21

JAAAOK00000000

metagenome

35

Cyanobacteria bacterium

HJH.14

JALQZF000000000

metagenome

45

Cyanobacteria bacterium

J003

RFFR00000000

75

Cyanobacteria bacterium

J069

RFIF00000000

metagenome

70

Cyanobacteria bacterium

J083

RFIT00000000

metagenome

74

Cyanobacteria bacterium

J149

RFLH00000000

metagenome

60

Cyanobacteria bacterium

KgW148

JAIWOC000000000

metagenome

69

Cyanobacteria bacterium

LJ.18

JALRFX000000000

metagenome

47

Cyanobacteria bacterium

LJ.22

JALRGC000000000

metagenome

35

Cyanobacteria bacterium

METABAT.1kb 096

JAIERL00000000

metagenome

34

Cyanobacteria bacterium

MH1 Bin12

JAALKG000000000

metagenome

59

Cyanobacteria bacterium

NC groundwater 1444

JACQUT000000000

metagenome

56

Cyanobacteria bacterium

OceanDNA-b16096

EEXB00000000

metagenome

71

Cyanobacteria bacterium

OceanDNA-b16213

EEZA00000000

metagenome

74

Cyanobacteria bacterium

OceanDNA-b16215

EEZB00000000

metagenome

71

Cyanobacteria bacterium

OceanDNA-b16216

EEZC00000000

metagenome

75

Cyanobacteria bacterium

OceanDNA-b16218

EEZD00000000

metagenome

74

Cyanobacteria bacterium

OceanDNA-b16246

EEZV00000000

metagenome

75

Cyanobacteria bacterium

OceanDNA-b16723

EFCH00000000

metagenome

46

Cyanobacteria bacterium

OH_PBB_10

JAEZQW000000000

metagenome

27

Cyanobacteria bacterium

OH_PDB_112

JAEWLZ000000000

metagenome

62

Cyanobacteria bacterium

OH_HFB_136

JAEYCX000000000

metagenome

71

Cyanobacteria bacterium

OH_HBrB_170

JAEXPA000000000

metagenome

44

Cyanobacteria bacterium

OH_SFB_17

JAEWYI000000000

metagenome

58

Cyanobacteria bacterium

OH_CFB_184

JAEZOG000000000

metagenome

52

Cyanobacteria bacterium

OH_HBrB_202

JAEXPZ000000000

metagenome

63

Cyanobacteria bacterium

OH_HDB_209

JAEXYY000000000

metagenome

69

Cyanobacteria bacterium

OH_CDB_20

JAEZIX000000000

metagenome

66

Cyanobacteria bacterium

OH_SFB_222

JAEWZU000000000

metagenome

68

Cyanobacteria bacterium

OH_PDB_230

JAEZSO000000000

metagenome

70

Cyanobacteria bacterium

OH_CBB_238

JAEYQN000000000

metagenome

71

Cyanobacteria bacterium

OH_CBrB_359

JAEZET000000000

metagenome

70

Cyanobacteria bacterium

OH_SDB_54

JAEWVH000000000

metagenome

47

Cyanobacteria bacterium

OH_CDB_58

JAEZLC000000000

metagenome

60

Cyanobacteria bacterium

OH_HBrB_90

JAEXVU000000000

metagenome

53

Cyanobacteria bacterium

PMG 4

SEBC00000000

metagenome

14

Cyanobacteria bacterium

PMG 4

SEBC00000000

metagenome

14

Cyanobacteria bacterium

PMG 12

SEBD00000000

metagenome

15

Cyanobacteria bacterium

PR.023

PNKA00000000

metagenome

60

Cyanobacteria bacterium

PR.3.49

PNKB00000000

metagenome

49

Cyanobacteria bacterium

REEB417

JAGWVJ000000000

49

Cyanobacteria bacterium

REEB446

JAGWWP000000000

70

Cyanobacteria bacterium

REEB498

JAGWYU000000000

46

Cyanobacteria bacterium

REEB65

JAGWZZ000000000

55

Cyanobacteria bacterium

REEB67

JAGXAB000000000

75

Cyanobacteria bacterium

SCGC 014-E08

JGI

17

Cyanobacteria bacterium

SCGC AG-490-B05

JGI

metagenome

38

Cyanobacteria bacterium

SCGC AG-650-H12

JGI

metagenome

41

Cyanobacteria bacterium

SCGC AG-650-K04

JGI

metagenome

38

Cyanobacteria bacterium

SIG26

SUTS00000000

metagenome

68

Cyanobacteria bacterium

SIG27

SUTT00000000

metagenome

66

Cyanobacteria bacterium

SIG28

SUTU00000000

metagenome

70

Cyanobacteria bacterium

SIG29

SUTV00000000

metagenome

65

Cyanobacteria bacterium

SIG30

SUTW00000000

metagenome

70

Cyanobacteria bacterium

SIG31

SUTX00000000

metagenome

67

Cyanobacteria bacterium

SIG32

SUTY00000000

metagenome

53

Cyanobacteria bacterium

SW 4 48 29

PXQI00000000

metagenome

76

Cyanobacteria bacterium

SW 9 47 5

PXQF00000000

metagenome

11

Cyanobacteria bacterium

T3Sed10 304

PXCV00000000

metagenome

72

Cyanobacteria bacterium

T3Sed10 36R1

PXEF00000000

metagenome

62

Cyanobacteria bacterium

TMED177

NHIA00000000

metagenome

27

Cyanobacteria bacterium

TMED188

NHIL00000000

metagenome

33

Cyanobacteria bacterium

TMED229

NHKA00000000

metagenome

35

Cyanobacteria bacterium

HKST-UBA01

JAGQHG000000000

metagenome

70

Cyanobacteria bacterium

HKST-UBA02

JAGQHH000000000

metagenome

64

Cyanobacteria bacterium

HKST-UBA03

JAGQHI000000000

metagenome

72

Cyanobacteria bacterium

HKST-UBA04

JAGQHJ000000000

metagenome

76

Cyanobacteria bacterium

HKST-UBA05

JAGQHK000000000

metagenome

50

Cyanobacteria bacterium

HKST-UBA06

JAGQHL000000000

metagenome

70

Cyanobacteria bacterium

O_S5_bin.13

JAHZLCS000000000

metagenome

52

Cyanobacteria bacterium

O_S4.2_bin.1

JAHZJVS000000000

metagenome

73

Cyanobacteria bacterium

UBA10660

DMXX00000000

metagenome

64

Cyanobacteria bacterium

UBA10660

DMXX00000000

metagenome

64

Cyanobacteria bacterium

UBA11049

DPEI00000000

metagenome

73

Cyanobacteria bacterium

UBA11148

DORG00000000

metagenome

60

Cyanobacteria bacterium

UBA11149

DORF00000000

metagenome

74

Cyanobacteria bacterium

UBA11153

DOIX00000000

metagenome

74

Cyanobacteria bacterium

UBA11159

DOJB00000000

metagenome

74

Cyanobacteria bacterium

UBA11162

DNZA00000000

metagenome

58

Cyanobacteria bacterium

UBA11166

DNYY00000000

metagenome

69

Cyanobacteria bacterium

UBA11367

DNOY00000000

metagenome

68

Cyanobacteria bacterium

UBA11368

DNOW00000000

metagenome

71

Cyanobacteria bacterium

UBA11369

DNOV00000000

metagenome

71

Cyanobacteria bacterium

UBA11370

DNGI00000000

metagenome

70

Cyanobacteria bacterium

UBA11371

DNGJ00000000

metagenome

76

Cyanobacteria bacterium

UBA11440

DOQK00000000

metagenome

69

Cyanobacteria bacterium

UBA11440

DOQK00000000

metagenome

69

Cyanobacteria bacterium

UBA11691

DOHO00000000

metagenome

72

Cyanobacteria bacterium

UBA1186

DBYM00000000

metagenome

68

Cyanobacteria bacterium

UBA11991

DOWB00000000

metagenome

58

Cyanobacteria bacterium

UBA11991

DOWB00000000

metagenome

58

Cyanobacteria bacterium

UBA1221

DBXD00000000

metagenome

68

Cyanobacteria bacterium

UBA12227

DMEQ00000000

metagenome

58

Cyanobacteria bacterium

UBA2320

DDVE00000000

metagenome

75

Cyanobacteria bacterium

UBA2813

DEGZ00000000

metagenome

68

Cyanobacteria bacterium

UBA2819

DEGT00000000

metagenome

69

Cyanobacteria bacterium

UBA2855

DEFJ00000000

metagenome

64

Cyanobacteria bacterium

UBA2877

DEEN00000000

metagenome

69

Cyanobacteria bacterium

UBA2883

DEEH00000000

metagenome

68

Cyanobacteria bacterium

UBA2892

DEDY00000000

metagenome

68

Cyanobacteria bacterium

UBA3301

DESZ00000000

metagenome

69

Cyanobacteria bacterium

UBA3803

DFEL00000000

metagenome

49

Cyanobacteria bacterium

UBA4093

DFYB00000000

metagenome

70

Cyanobacteria bacterium

UBA4641

DHMN00000000

metagenome

47

Cyanobacteria bacterium

UBA6393

DJQF00000000

metagenome

62

Cyanobacteria bacterium

UBA6446

DJOE00000000

metagenome

70

Cyanobacteria bacterium

UBA791

DBIX00000000

metagenome

70

Cyanobacteria bacterium

UBA8156

DMPD00000000

metagenome

71

Cyanobacteria bacterium

UBA8530

DOBT00000000

metagenome

66

Cyanobacteria bacterium

UBA8543

DMJW00000000

76

Cyanobacteria bacterium

UBA8553

DLUV00000000

metagenome

74

Cyanobacteria bacterium

UBA8803

DNXU00000000

metagenome

74

Cyanobacteria bacterium

UBA9226

DOVO00000000

metagenome

73

Cyanobacteria bacterium

UBA9273

DNME00000000

metagenome

68

Cyanobacteria bacterium

UBA947

DBCX00000000

metagenome

70

Cyanobacteria bacterium

UBA9579

DNSU00000000

metagenome

61

Cyanobacteria bacterium

UBA9971

DNRP00000000

metagenome

67

Cyanobacteria/Melainabacteria group

GL2-53

DAZW00000000

metagenome

66

Cyanobacteria/Melainabacteria group

S15B-MN24

DAZV00000000

metagenome

70

Unidentified cyanobacterium

13 1 40CM 2 61 4

MNHI00000000

metagenome

18

Cyanobacterium

BACL30 MAG-120619

LICO00000000

69

Cyanobacterium

BACL30 MAG-120619-bin27

LICO00000000

65

Cyanobacterium

Cyano1

PKDN00000000

metagenome

62

Cyanobacterium

Cyano2

PKDM00000000

metagenome

71

Cyanobacterium

G8-9

PYVJ00000000

27

Cyanobacterium sp.

Zagget 111 MP

Ga0015049

70

Cyanobiont of Ornithocercus magnificus

OmCyn01

BIMP00000000

76

Cyanobium sp.

16 1

VMCY00000000

metagenome

71

Cyanobium sp.

CSSed162cmA 499R1

SKRX00000000

metagenome

70

Cyanobium sp.

M30B57

JAGYKC000000000

metagenome

70

Cyanobium sp.

M55B138

JAGYNF000000000

metagenome

64

Cyanobium sp.

PLM2.Bin73

REEV00000000

metagenome

76

Cyanobium sp.

RS427 42782

PBVK00000000

33

Cyanobium sp.

SAT1300 23347

PAXG00000000

metagenome

28

Cyanothece sp.

UBA12306

DLXW00000000

metagenome

69

Cylindrospermopsis raciborskii

MYJ.16

JALRHG000000000

metagenome

56

Dolichospermum circinale

Clear-D4

JACVZX000000000

metagenome

75

Dolichospermum sp.

SB001

JAEMTT000000000

metagenome

74

Filamentous cyanobacterium

CCP1

PVWE00000000

58

Filamentous cyanobacterium

CCP5

PYEQ00000000

73

Filamentous cyanobacterium

Phorm 46

PVWH00000000

67

Fischerella sp.

SpSt-362

DSPK00000000

metagenome

72

Fischerella thermalis

WC217

NHAJ00000000

71

Fischerella thermalis

CCMEE 5319

NMQD00000000

74

Geminocystis sp.

M7585 C2015 104

DVEF00000000

76

Gloeobacter violaceus

SpSt-379

DSQC00000000

metagenome

62

Gloeobacterales cyanobacterium

ES-bin-141

JACMIX000000000

metagenome

75

Gloeobacteraceae cyanobacterium

ES-bin-144

JACMIY000000000

metagenome

60

Gloeobacteraceae cyanobacterium

ES-bin-316

JACMLO000000000

metagenome

50

Gloeocapsa sp.

UFS-A4-WI-NPMV-4B04

JAHHHE000000000

metagenome

74

Gomphosphaeria aponina

SAG 52.96=DSM 107014

JADQBC000000000

59

Halothece sp.

BinSanityLC-kmean-bin 24

JAHEOB000000000

metagenome

75

Halothece sp.

KZN 1

MDVL00000000

also as Euhalothece

76

Halothece sp.

SG1 65 4

JGI

62

Hassallia sp.

WJT32-NPBG1

JAHHHG000000000

metagenome

73

Hydrococcus sp.

CSU 1 8

JAAUPD000000000

metagenome

38

Hydrococcus sp.

RM1 1 31

JAAUQM000000000

metagenome

15

Hydrococcus sp.

SU 1 0

JAAUUS000000000

metagenome

26

Hydrocoleum sp.

CS-953

LGSU00000000

76

Jacksonvillea sp.

ISTCYN1

VLNZ00000000

67

Leptolyngbya valderiana

BDU 20041

LSYZ00000000

71

Leptolyngbya sp.

2LT21S03

JGI

75

Leptolyngbya sp.

7M

CP070897

72

Leptolyngbya sp.

15MV

CP071923

66

Leptolyngbya sp.

CYN1

QUBX00000000

metagenome

58

Leptolyngbya sp.

DLM2.Bin27

RECJ00000000

metagenome

73

Leptolyngbya sp.

isolate ES-bin-223

JACMKL000000000

metagenome

66

Leptolyngbya sp.

PLA1

QWIH00000000

metagenome

67

Leptolyngbya sp.

PLA2

QWIG00000000

metagenome

71

Leptolyngbya sp.

PLA3

QWIF00000000

metagenome

70

Leptolyngbya sp.

RL 3 1

JAAUQE000000000

metagenome

67

Leptolyngbya sp.

SIO1E4

JAAHFU00000000

metagenome

75

Leptolyngbyaceae cyanobacterium

CSSed162cmA 214

SKLP00000000

metagenome

51

Leptolyngbyaceae cyanobacterium

CSSed162cmB 428R1

SLAZ00000000

metagenome

48

Leptolyngbyaceae cyanobacterium

CSSed165cm 216

SLIY00000000

metagenome

62

Leptolyngbyaceae cyanobacterium

MAG.088

JAHQVZ000000000

metagenome

76

Leptolyngbyaceae cyanobacterium

M65 K2018 10

DVEE00000000

metagenome

75

Leptothoe spongobia

TAU-MAC 1115

JADOES000000000

66

Leptothoe kymatousa

TAU-MAC 1615

JADOER000000000

58

Limnoraphis robusta

CS-951

LATL00000000.2


68

Mastigocladus laminosus

UU774

MNPM00000000.1

72

Mastigocladus laminosus

UU774

JXIJ00000000

71

Mastigocladus laminosus

WC112

NGJL00000000

60

Microcoleaceae cyanobacterium

S07.Bin061

JAABRK000000000

metagenome

42

Microcoleaceae bacterium

UBA10368

DNYC00000000

metagenome

59

Microcoleaceae bacterium

UBA11344

DMYK00000000

metagenome

65

Microcoleaceae bacterium

UBA9251

DPLL00000000

metagenome

70

Microcoleus sp.

C1-bin4

JACVRF000000000

metagenome

59

Microcoleus sp.

Co-bin12

JACVRO000000000

metagenome

44

Microcoleus sp.

CSU 2 2

JAAUPI000000000

metagenome

75

Microcoleus sp.

GA 180221 E-1-1-MAG-43 4

JAIMJO000000000

metagenome

56

Microcoleus sp.

GA 180221 E-1-2-MAG-45 10

JAIMKD000000000

metagenome

73

Microcoleus sp.

GA 180221 E-1-1-MAG-45 11

JAIMJP000000000

metagenome

76

Microcoleus sp.

GA 180221 E-2-1-MAG-45 12

JAIMKT000000000

metagenome

76

Microcoleus sp.

SM1 3 4

JAAUTI000000000

metagenome

71

Microcoleus sp.

SU 5 3

JAAUVD000000000

metagenome

73

Microcoleus sp.

SU 5 6

JAAUVE000000000

metagenome

55

Microcoleus sp.

T1-bin1

JACVSI000000000

metagenome

62

Microcoleus sp.

T3-bin5

JACVSO000000000

metagenome

57

Microcystis flos-aquae

DF17

QQWB00000000

metagenome

74

Microcystis panniformis

NKJ.11

JALRHW000000000

metagenome

69

Microcystis sp.

53598_E5

JAJTDG000000000

metagenome

72

Microcystis sp.

LSC13-02

MTBT00000000

73

Moorea sp.

SIO4A5

JAAHHZ000000000

metagenome

76

Nodosilinea sp.

BSH.14

JALQST000000000

metagenome

69

Nodosilinea sp.

CSSed162cmB 84

SLGH00000000

metagenome

30

Nodularia sp.

BSH.9

JALQTB000000000

metagenome

40

Nodularia sp.

CSSed162cmB 296

SKYQ00000000

metagenome

33

Nostocales cyanobacterium

PH2015 08D 39 10

RDYJ00000000

metagenome

71

Nostocales cyanobacterium

PH2015 08D 37 15

RDYK00000000

metagenome

64

Nostocales cyanobacterium

W4

JAAXUI00000000

metagenome

76

Nostoc cf. edaphicum

LEGE 7299

JADEXF000000000

60

Nostoc sp.

3336mG

QHKA00000000

71

Nostoc sp.

CMAA1605

PJIZ00000000


57

Nostoc sp.

C3-bin3

JACVRH000000000

metagenome

59

Nostoc sp.

'Peltigera malacea cyanobiont' DB3992

NSHF00000000

76

Nostoc linckia

NIES-25 AP018222

AP018222

66

Nostoc carneum

NIES-2107 AP018180

AP018180

75

Nostoc commune

S1-bin1

PRJNA528932

herbarium specimen

70

Nostoc flagelliforme

S2-bin1

PRJNA528932

herbarium specimen

72

Nostoc sp.

RI 552

WGNO00000000

metagenome

76

Nostocaceae cyanobacterium

CSSed10 463m

PWQB00000000

metagenome

59

Nostocaceae cyanobacterium

isolate MGR bin409

JACDGJ000000000

metagenome

51

Okeania sp.

KiyG1

BLZO00000000

74

Oscillatoria sp.

S11.Bin022

JAABSJ000000000

metagenome

75

Oscillatoriales cyanobacterium

Centralia_MAG_596

JAJPKC000000000

metagenome

63

Oscillatoriales cyanobacterium

LEGE 11467

JADEXN000000000

44

Oscillatoriales cyanobacterium

PH2015 14S 45 132

RDXC00000000

metagenome

76

Oscillatoriales cyanobacterium

PH2015 10S 46 199

RDXU00000000

metagenome

70

Oscillatoriales cyanobacterium

PH2015 07D 46 1245

RDYR00000000

metagenome

76

Oscillatoriales cyanobacterium

PH2015 07D 45 11

RDYS00000000

metagenome

64

Oscillatoriales cyanobacterium

PH2015 06S 54 30

RDYZ00000000

metagenome

73

Oscillatoriales cyanobacterium

PH2015 06S 46 2585

RDZA00000000

metagenome

74

Oscillatoriales cyanobacterium

PH2015 06S 45 83

RDZB00000000

metagenome

66

Oscillatoriales cyanobacterium

PH2015 02D 45 1038

REAK00000000

metagenome

64

Oscillatoriales cyanobacterium

PH2015 01D 46 31

REAX00000000

metagenome

67

Oscillatoriales cyanobacterium

SpSt-402

DSRD0000000

metagenome

39

Oscillatoriales cyanobacterium

USR001

MBRE00000000

31

Phormidesmis sp.

FL-bin-119

JACMMV000000000

metagenome

39

Cf. Phormidesmis sp.

LEGE 11477

JADEXO000000000

38

Phormidesmis priestleyi

ULC027

QGMP00000000

75

Phormidium pseudopriestleyi

FRX01

JAFLQW000000000

71

Phormidium tanganyikae

FI6-MK23

JAHHHU000000000

metagenome

76

Phormidium willei

BDU 130791

LSZA00000000

73

Phormidium sp.

Bin_1

JAIFKK000000000

metagenome

55

Phormidium sp.

CSSed162cmB 426

SLAY00000000

metagenome

63

Phormidium sp.

CSSed165cm 523

SLQG00000000

metagenome

69

Phormidium sp.

GEM2.Bin31

REDN00000000

metagenome

73

Phormidium sp.

S10.Bin050

JAABSD000000000

metagenome

75

Pleurocapsa minor

GSE-CHR-MK-17-07R

JAHHHY000000000

metagenome

71

Plectolyngbya sp.

WJT66-NPBG17

JAHHHX000000000

metagenome

76

Planktothrix agardhii

Bin4

JACDQL000000000

metagenome

58

Planktothrix agardhii

CCAP 1459/11A

BJCD00000000

12

Planktothrix rubescens

PCC 7821

LR812491

64

Planktothrix sp.

bin-235-243

JAIFLY000000000

metagenome

70

Planktothrix sp.

FACHB-1355

JACJUP000000000

63

Planktothrix sp.

UBA8402

DMPJ00000000

metagenome

49

Planktothrix sp.

UBA8407

DMPE00000000

metagenome

53

Planktothrix sp.

UBA10369

DNYD00000000

metagenome

57

Prochlorococcus marinus

F1-20-MAGs057

SXXM00000000

metagenome

69

Prochlorococcus marinus

F1-20-MAGs142

SYAQ00000000

metagenome

43

Prochlorococcus marinus

SCGC AAA795-F05

CVSV00000000

67

Prochlorococcus marinus

SCGC AAA795-I06

CVSW00000000

71

Prochlorococcus marinus

SCGC AAA795-I15

CVSY00000000

71

Prochlorococcus marinus

SCGC AAA795-J16

CVSX00000000

71

Prochlorococcus marinus

SCGC AAA795-M23

CVSZ00000000

70

Prochlorococcus sp.

HOT 208 60

MVOP00000000

44

Prochlorococcus sp.

HOT208 60m 805A16

MWPA00000000

33

Prochlorococcus sp.

HOT208 60m 808A10

MWOZ00000000

46

Prochlorococcus sp.

HOT208 60m 808G21

MWOY00000000

47

Prochlorococcus sp.

HOT208 60m 808M21

MWOX00000000

73

Prochlorococcus sp.

HOT208 60m 810B23

MWOW00000000

69

Prochlorococcus sp.

HOT208 60m 810P02

MWOV00000000

72

Prochlorococcus sp.

HOT208 60m 810P02

MWOV00000000

74

Prochlorococcus sp.

HOT208 60m 813B04

MWOU00000000

41

Prochlorococcus sp.

HOT208 60m 8.13E23

MWOT00000000

16

Prochlorococcus sp.

HOT208 60m 813G15

MWOS00000000

49

Prochlorococcus sp.

HOT208 60m 813I02

MWOR00000000

71

Prochlorococcus sp.

HOT208 60m 813L03

MWOQ00000000

35

Prochlorococcus sp.

HOT208 60m 813O04

MWOP00000000

55

Prochlorococcus sp.

HOT208 60m 813O14

MWOO00000000

73

Prochlorococcus sp.

HOT212 60m 823D04

MWPG00000000

16

Prochlorococcus sp.

HOT212 60m 824C06

MWPF00000000

44

Prochlorococcus sp.

HOT212 60m 824E10

MWPE00000000

42

Prochlorococcus sp.

HOT212 60m 824O11

MWPD00000000

47

Prochlorococcus sp.

HOT212 60m 826P21

MWPC00000000

66

Prochlorococcus sp.

REDSEA-S17 B1

LUPS00000000

metagenome

56

Prochlorococcus sp.

REDSEA-S22 B1

LUPT00000000

metagenome

47

Prochlorococcus sp.

REDSEA-S23 B1

LUPU00000000

metagenome

56

Prochlorococcus sp.

REDSEA-S28 B1

LUPV00000000

metagenome

46

Prochlorococcus sp.

SP3034 67481

PBHJ00000000

metagenome

32

Prochlorococcus sp.

TMED223

NHJU00000000

metagenome

55

Prochlorococcus sp.

UBA1269

DBVH00000000

metagenome

46

Prochlorococcus sp.

UBA1273

DBVD00000000

metagenome

45

Prochlorococcus sp.

UBA1528

DCQC00000000

metagenome

74

Prochlorococcus sp.

UBA3467

DFRI00000000

metagenome

45

Prochlorococcus sp.

UBA3999

DGBR00000000

metagenome

71

Prochlorococcus sp.

UBA7854

DLSU00000000

metagenome

43

Prochlorococcus sp.

W10

ALPH00000000

22

Prochlorococcus sp.

W11

ALPI00000000

39

Prochlorococcus sp.

W12

ALPJ00000000

12

Prochlorococcus sp.

W2

ALPB00000000

64

Prochlorococcus sp.

W3

ALPC00000000

29

Prochlorococcus sp.

W4

ALPD00000000

28

Prochlorococcus sp.

W5

ALPL00000000

4

Prochlorococcus sp.

W6

ALPK00000000

28

Prochlorococcus sp.

W7

ALPE00000000

50

Prochlorococcus sp.

W8

ALPF00000000

63

Prochlorococcus sp.

W9

ALPG00000000

12

Prochloron didemni

P1

JGI

75

Prochloron sp.

SulCav FS08

DYNF00000000

metagenome

76

Prochloron sp.

SP5CPC1

JACONB000000000

metagenome

65

Prochlorothrix hollandica

CALU 1027=PCC 9006

AJTX00000000

75

Pseudanabaena sp.

bin-143

JAIFKZ000000000

metagenome

75

Pseudanabaena sp.

CRU 2 10

JAAUOO000000000

metagenome

46

Pseudanabaena sp.

GA 180221 E-2-1-MAG-43 5

JAIMKQ000000000

metagenome

62

Pseudanabaena sp.

M165S2SP1A06QC

JADBVY000000000

metagenome

77

Pseudanabaena sp.

M090S1SP1A06QC

JADBVZ000000000

metagenome

75

Pseudanabaena sp.

M007S1SP1A06QC

JADBWA000000000

metagenome

75

Pseudanabaena sp.

M158S2SP1A06QC

JADBWB000000000

metagenome

70

Pseudanabaena sp.

M109S1SP1A06QC

JADBWC000000000

metagenome

70

Pseudanabaena sp.

M051S1SP1A06QC

JADBWD000000000

metagenome

72

Pseudanabaena sp.

M079S1SP2A07QC

JADBWP000000000

metagenome

74

Pseudanabaena sp.

M074S1SP2A07QC

JADBWQ000000000

metagenome

76

Pseudanabaena sp.

M114S2SP2A07QC

JADBWR000000000

metagenome

71

Pseudanabaena sp.

M179S2SP2A07QC

JADBWT000000000

metagenome

75

Pseudanabaena sp.

M090S1SP2A07QC

JADBWW000000000

metagenome

72

Pseudanabaena sp.

M109S1SP2A07QC

JADBWX000000000

metagenome

65

Pseudanabaena sp.

M172S2SP2A07QC

JADBWY000000000

metagenome

73

Pseudanabaena sp.

M110S1SP2A07QC

JADBWZ000000000

metagenome

72

Pseudanabaena sp.

RU 4 16

JAAURW000000000

metagenome

39

Pseudanabaena sp.

UBA10436

DNLA00000000

76

Pseudanabaena sp.

ULC068

QBMK00000000

75

Raphidiopsis raciborskii

CS-506 A

VDFG00000000

76

Raphidiopsis raciborskii

LB2897

VOIM00000000

58

Richelia sp.

CSU 2 1

JAAUPF000000000

metagenome

76

Richelia intracellularis

HM01

CAIS00000000

63

Richelia intracellularis

RC01

CBZS00000000

76

Richelia sp.

SL 2 1

JAAUSO000000000

metagenome

76

Richelia sp.

SM2 1 7

JAAUUF000000000

metagenome

61

Richelia intracellularis

UBA3481

DFQU00000000

metagenome

71

Richelia sp.

UBA11571

DLZW00000000

metagenome

67

Rivularia sp.

ALOHA_DT_140

JALJPP000000000

metagenome

66

Roseofilum sp.

Cyano bin5

Ga0079927

64

Roseofilum sp.

LKpool bin4

Ga0079931

37

Scytonema sp.

CRU 2 7

JAAUOR000000000

metagenome

63

Scytonema hyalinum

WJT4-NPBG1

JAHHIB000000000

metagenome

72

Scytonema millei

VB511283

JTJC00000000.2

regression from 79

41

Spirulina sp.

bin-256

JAIFME000000000

metagenome

21

Spirulina sp.

DLM2.Bin59

RECT00000000

metagenome

69

Spirulina sp.

S17.Bin059

JAABSU000000000

metagenome

75

Synechococcales cyanobacterium

bin2

JAAFJH000000000

metagenome

71

Synechococcales cyanobacterium

bin59

JAAFHZ000000000

metagenome

76

Synechococcales cyanobacterium

MH2 Bin29

JAALKT000000000

metagenome

73

Synechococcales cyanobacterium

T60 A2020 3

JACYMB000000000

metagenome

75

Synechococcales bacterium

UBA12195

DPNP00000000

metagenome

56

Synechococcales bacterium

UBA8647

DOVM00000000

metagenome

68

Synechococcus lacustris

ND1_Bin_16

JAKFWV000000000

metagenome

69

Synechococcus lacustris

Tobar12m-G28

JAIPDG000000000

metagenome

65

Synechococcus sp.

Bin 27

JGI

74

Synechococcus sp.

Bin 28

JGI

29

Synechococcus sp.

BS30m-G30

JADHRT000000000

metagenome

67

Synechococcus sp.

BS301-5m-G53

JADHMX000000000

metagenome

63

Synechococcus sp.

CO36406bin 26

WTHF000000000

metagenome

50

Synechococcus sp.

CO36386bin 29

WTFZ000000000

metagenome

62

Synechococcus sp.

CO36386bin 37

WTGE000000000

metagenome

64

Synechococcus sp.

HW C51

JAAZUZ000000000

metagenome

72

Synechococcus sp.

HW C201

JAAZVJ000000000

metagenome

45

Synechococcus sp.

KhW C443

JAAZWA000000000

metagenome

42

Synechococcus sp.

PL34863bin 39

WTHL000000000

metagenome

78

Synechococcus sp.

MED-G67

QOPT00000000

metagenome

68

Synechococcus sp.

MED-G68

QOPS00000000

metagenome

74

Synechococcus sp.

MED-G69

QOPR00000000

metagenome

66

Synechococcus sp.

MED-G70

QOPQ00000000

metagenome

66

Synechococcus sp.

MED-G71

QOPP00000000

metagenome

72

Synechococcus sp.

MOX_bin13

JAKMDF000000000

metagenome

36

Synechococcus sp.

MOX_bin32

JAKMDY000000000

metagenome

35

Synechococcus sp.

MOX_bin73

JAKMFN000000000

metagenome

44

Synechococcus sp.

MU1648

JAKUHI000000000


75

Synechococcus sp.

MU1655

JAKUHK000000000


68

Synechococcus sp.

SB0664 bin 36

VXRQ00000000

metagenome

53

Synechococcus sp.

SB0662 bin 45

VXPA00000000

metagenome

56

Synechococcus sp.

SB0663 bin 10

VXQA00000000

metagenome

66

Synechococcus sp.

SB0672 bin 10

VYAE00000000

metagenome

69

Synechococcus sp.

SB0665 bin 28

VXSZ00000000

metagenome

73

Synechococcus sp.

SB0663 bin 10

VXQA00000000

metagenome

74

Synechococcus sp.

SB0672 bin 6

VYAY00000000

metagenome

73

Synechococcus sp.

SB0669 bin 7

VXYH00000000

metagenome

75

Synechococcus sp.

SB0669 bin 8

VXYI00000000

metagenome

73

Synechococcus sp.

SB0673 bin 10

VYBD00000000

metagenome

75

Synechococcus sp.

SB0675 bin 7

VYDK00000000

metagenome

76

Synechococcus sp.

SB0677 bin 5

VYFS00000000

metagenome

76

Synechococcus sp.

SB0678 bin 12

VYGA00000000

metagenome

75

Synechococcus sp.

SB0667 bin 8

VXWB00000000

metagenome

76

Synechococcus sp.

SB0670 bin 20

VXYW00000000

metagenome

75

Synechococcus sp.

16 2

VMCZ00000000

metagenome

47

Synechococcus sp.

GFB01

LFEK00000000

75

Synechococcus sp.

Lanier

MWMJ00000000

metagenome

32

Synechococcus sp.

NP17 2133

PBYZ00000000

metagenome

74

Synechococcus sp.

REDSEA-S02 B4

LURK00000000

metagenome

74

Synechococcus sp.

RS344 3044

PBPY00000000

metagenome

48

Synechococcus sp.

SupBloom Metag 53

JAEMSK000000000

metagenome

73

Synechococcus sp.

SAT82 31040

PAJY00000000

metagenome

42

Synechococcus sp.

TMED20

NHBZ00000000

metagenome

71

Synechococcus sp.

TMED66

NHDT00000000

metagenome

72

Synechococcus sp.

TMED155

NHHE00000000

metagenome

69

Synechococcus sp.

TMED169

NHHS00000000

metagenome

46

Synechococcus sp.

TMED185

NHII00000000

metagenome

56

Synechococcus sp.

TMED187

NHIK00000000

metagenome

37

Synechococcus sp.

TMED19

NHBY00000000

metagenome

74

Synechococcus sp.

TMED205

NHJC00000000

metagenome

42

Synechococcus sp.

TMED90

NHER00000000

metagenome

52

Synechococcus sp.

Tobar2m-G35

JAIPDH000000000

metagenome

71

Synechococcus sp.

Tous

MRUD00000000

metagenome

74

Synechococcus sp.

UBA8638

DOFR00000000

metagenome

66

Synechococcus sp.

UBA9887

DPOG00000000

metagenome

70

Synechococcus sp.

isolate NIOZ-UU94

JACNLY000000000

metagenome

72

Synechococcus sp.

isolate NIOZ-UU175

JACNIM000000000

metagenome

5

Thermosynechococcus sp.

M55 K2018 12

DVEC00000000

metagenome

76

Thermosynechococcus sp.

OHK43

JACOMP000000000

metagenome

70

Thermosynechococcus sp.

WC-1

JAGVDA000000000

metagenome

57

Tolypothrix sp.

Co-bin9

JACVSG000000000

metagenome

52

Tolypothrix sp.

T3-bin4

JACVSN000000000

metagenome

32

Trichodesmium thiebautii

H9-4

LAMW00000000

44

Trichodesmium sp.

jk18x7bins.61

JAJEAQ000000000

metagenome

72

Trichodesmium sp.

MAG_R03

JAKQYF000000000

metagenome

76

Trichodesmium sp.

MAG_R04

JAKQYG000000000

metagenome

71

Tychonema sp.

BBK16

JAKJHX000000000


74

uncultured Aliterella sp.

10 20180511 Bin MAXBIN 75

CAJQOK000000000

metagenome

58

uncultured cyanobacterium

B12 bin-1940

CAIYEC000000000

50

uncultured cyanobacterium

LaPlata-1m-b bin-276

CAITZL000000000

metagenome

75

uncultured cyanobacterium

LaPlata-1m-b bin-676

CAIOXF000000000

metagenome

76

uncultured cyanobacterium

Erken-D3 bin-1049

CAIRWM000000000

metagenome

76

uncultured cyanobacterium

MGYG-HGUT-02235

CABMDG000000000

metagenome

70

uncultured cyanobacterium

MGYG-HGUT-03890

CABOOI000000000

metagenome

70

uncultured cyanobacterium

MGYG-HGUT-04459

CABPKF000000000

metagenome

60

uncultured cyanobacterium

SRR7188232_bin.6

CALYRS000000000

metagenome

40

uncultured cyanobacterium

SRR7188236_bin.56

CALYTW000000000

metagenome

68

uncultured cyanobacterium

T7-5 bin-036

CAIMSC000000000

75

uncultured cyanobacterium

T7 bin-034

CAIWLC000000000

76

uncultured cyanobacterium

B12 bin-0982

CAIVAU000000000

76

uncultured cyanobacterium

I3-5 bin-680

CAIJEA000000000

75

uncultured cyanobacterium

Ki2-D1 bin-0219

CAIWSY000000000

metagenome

60

uncultured cyanobacterium

Ki2-D2 bin-1184

CAIWIR000000000

metagenome

60

uncultured cyanobacterium

Umea1p3 bin-620

CAIJJB000000000

metagenome

73

uncultured cyanobacterium

Umea1p1 bin-912

CAIYEE000000000

metagenome

66

uncultured Snowella sp.

Erken-D5 bin-0612

CAIRRO000000000

metagenome

29

uncultured Microcoleus sp.

AVDCRST MAG84

CADCTZ000000000

72

uncultured Leptolyngbya sp.

AVDCRST MAG94

CADCTY000000000

39

uncultured Nodularia sp.

LaPlata-1m-b bin-688

CAIVJC000000000

57

uncultured Synechococcus sp.

3 20180319 Bin 161 1

CAJQPG000000000

metagenome

46

uncultured Synechococcus sp.

3 20180319 Bin 305 1

CAJQPQ000000000

metagenome

64

Vulcanococcus sp.

Con-13

JAHUZR000000000

70

Vulcanococcus sp.

CPBay Sum27G08 21

JAFMGK000000000

metagenome

67

Vulcanococcus sp.

CPBay Sum20G08 28

JAFMGD000000000

metagenome

63

Vulcanococcus sp.

CPBay Sum15G08 31

JAFMFG000000000

metagenome

66

Vulcanococcus sp.

DEBay Sum29DG08 32

JAFMMN000000000

metagenome

74

Vulcanococcus sp.

DEBay Sum22NG08 44

JAFMLP000000000

metagenome

70

Vulcanococcus sp.

DEBay Sum22DG08 74

JAFMKL000000000

metagenome

74

Vulcanococcus sp.

DEBay Sum29NG08 81

JAFMNC000000000

metagenome

66

Vulcanococcus sp.

CPBay Sum27L08 19

JAFMGO000000000

metagenome

75

Vulcanococcus sp.

CPBay Sum15L08 68

JAFMFX000000000

metagenome

75

Vulcanococcus sp.

HJH.2

JALQZH000000000

metagenome

44






Greater than 10% contaminated (many of these are also listed above):





Contam

Aphanocapsa montana

BDHKU210001

JTJD00000000

32.76

Chrysosporum ovalisporum

UAM-MAO

CDHJ00000000

22.19

Euhalothece

KZN 001

CP042326


33.3

Fischerella ambigua

UTEX 1903

JGI

38.8

Fischerella thermalis

CCMEE 5319

NMQD00000000

22.73

Hassallia byssoidea

VB512170

JTCM00000000

104.63

Halothece sp.

KZN 001

MDVL00000000

also as Euhalothece

12.42

Leptolyngbya valderiana

BDU 20041

LSYZ00000000

54.29

Limnoraphis robusta

CS-951

LATL00000000

11.79

Lyngbya confervoides

BDU141951

JTHE00000000.1

23.11

Microcystis aeruginosa

SPC777

ASZQ00000000

16.52

Mastigocoleus testarum

BC008

LMTZ00000000

41.11

Mastigocoleus testarum

BC008

AXAQ00000000

200

Prochlorococcus sp.

scB245a 518D8

JFNB00000000

11.96

Prochlorococcus marinus

HNLC1

GL947594

metagenome

250.33

Prochlorococcus marinus

HNLC2

GL947595

metagenome

250.33

Synechococcus sp.

TMED20

NHBZ00000000

41.38

Synechococcus sp.

TMED66

NHDT00000000

19.89

Scytonema millei

VB511283

JTJC00000000.1

44.54

Cyanobacterium

TDX16

NDGV00000000

156.41

Cyanobacteria bacterium

SCGC AG-650-H12

JGI

metagenome

12.96

Oscillatoriales cyanobacterium

MTP1

LNAA00000000

80.53






Chimeric (segments from two different cyanobacteria),

or poor sequences seriously disturbing tree topology:






Acaryochloris sp.

Moss Beach

CP071717



Anabaena sp.

49633_E8

JAJTDN000000000

metagenome


Anabaena sp.

49628_E55

JAJTDY000000000

metagenome


Anabaenopsis elenkinii

CCIBt3563

CP063311


Aphanocapsa lilacina

HA4352-LM1

JAHHGR000000000

metagenome


Aphanocapsa sp.

GSE-SYN-MK-11-07L

JAHHGS000000000

metagenome


Alkalinema sp.

RU 4 3

JAAUSA000000000

metagenome


Aphanizomenon flos-aquae

CCAP 1446/1C=PCC 7938 heterocyst

JAAMUW000000000


Aphanizomenon flos-aquae

CCAP 1446/1C=PCC 7938 vegetative

JAAMUX000000000


Aphanizomenon flos-aquae

UKL13-PB

LTEC00000000.2

metagenome


Argonema antarcticum

A004/B2

JAIQZN000000000



Argonema galeatum

A003/A1

JAIQZM000000000



Brasilonema octagenarum

HA4186-MV1

JAHHGW000000000

metagenome


Calothrix sp.

C42 A2020 38

JACYLQ000000000

metagenome


Calothrix sp.

PCC 7716

AP025018


Calothrix sp.

XPORK 5E

JGI

no longer available


Candidatus Atelocyanobacterium sp.

ALOHA_A2.5_9

JAKUPS000000000

metagenome


Candidatus Paraprochloron terpiosi

LD05

CP073341

metagenome


Chroococcidiopsis sp.

CCMEE 029

CP083761



Chroococcidiopsis sp.

CCNUC1

CP097480



Chroococcus sp.

FPU101

BLJI00000000


Coleofasciculus sp.

FACHB-125

JACJOI000000000


Coleofasciculus sp.

FACHB-129

JACJOH000000000


Coleofasciculus sp.

FACHB-SPT36

JACJSL000000000


Coleofasciculus sp.

FACHB-SPT9

JACJOJ000000000


Coleofasciculus sp.

FACHB-T130

JACJOG000000000


Crocosphaera sp.

ALOHA_ZT_9

JAKVAT000000000

metagenome


Cyanobacteria bacterium

MS008

JAKRSF000000000

metagenome


Cyanobacteria bacterium

WB6 1B 304

RGDS00000000

metagenome


Cyanobacteria bacterium

27 sequences:

PXPI00000000-PXPZ00000000

metagenomes



PXQA00000000-PXQI00000000

metagenomes


Cyanomargarita calcarea

GSE-NOS-MK-12-04C

JAHHGZ000000000

metagenome


Cyanosarcina radialis

HA8281-LM2

JAHHHA000000000

metagenome


Desertifilum sp.

S8C857

JAJOKC000000000

metagenome


Desmonostoc muscorum

CCALA 125

JACERF000000000


Desmonostoc muscorum

LEGE 12446

JADEXS000000000


Fischerella thermalis

M66 A2018 4

JACYMA000000000

metagenome


Fischerella thermalis

M58 A2018 9

JACYLY000000000

metagenome


Geminocystis sp.

GBBB08

VRZC00000000

metagenome


Gloeocapsa sp.

DLM2.Bin57

RECR00000000

metagenome


Gloeocapsopsis crepidinum

LEGE 6123

JADEWN000000000


Gloeomargaritaceae cyanobacterium

C42 A2020 66

JACYLR000000000

metagenome


Gloeotrichia echinulata

DEX184

JAGTJV000000000

metagenome


Halomicronema hongdechloris

C2206

LAZT00000000


Halomicronema hongdechloris

C2206

CP021983.1


Iningainema sp.

BLCCT55

JACXAE000000000


Kaiparowitsia implicata

GSE-PSE-MK54-09C

JAHHHI000000000

metagenome


Kastovskya adunca

ATA6-11-RM4

JAHHHJ000000000

metagenome


Kovacikia sp.

CCNU0001

CP083582



Leptodesmis sichuanensis

PKUAC-SCTA121

CP075171



Leptolyngbya sp.

SIO3F4

JAAHHO000000000

metagenome


Leptolyngbya sp.

SIOISBB

JAAHII000000000

metagenome


Leptolyngbya sp.

UWPOB LEPTO1

JAFLCJ000000000

metagenome


Leptolyngbyaceae cyanobacterium

HOT.MB2.61

JAIMBL000000000

metagenome


Leptothermofonsia sichuanensis

PKUAC-SCTE412

CP072600



Limnoraphis sp.

WC205

JAGTJT000000000

metagenome


Lyngbya sp.

HA4199-MV5

JAHHHL000000000

metagenome


Merismopedia glauca

CCAP 1448/3

PVWJ00000000


Microcoleus vaginatus

HSN003

CP031705



Microcoleus sp.

FACHB-45

JACJPE000000000


Microcoleus sp.

FACHB-SPT15

JACJNU000000000


Microcoleus vaginatus

WJT46-NPBG5

JAHHHM000000000

metagenome


Microseira wollei

NIES-4236

BLAY00000000


Moorea sp.

SS36440bin 2

WTKN00000000


Myxosarcina sp.

GA 180221 E-1-2-MAG-39 37

JAIMKC000000000

metagenome


Myxosarcina sp.

GA 180221 E-2-1-MAG-40 15

JAIMKV000000000

metagenome


Nodularia sphaerocarpa

UHCC 0038

CP060140



Nodularia sp.

LEGE 4288

JADEWE000000000


Nostoc sp.

CCCryo 231-06

JAHCSU000000000



Nostoc sp.

LLA-1

JAKOMP000000000

metagenome


Nostoc sp.

UHCC 0870

CP088016



Nostoc cf. commune

SO-36

AP025732



Nostoc indistinguendum

CM1-VF10

JAHHHS000000000

metagenome


Nostoc desertorum

CM1-VF14

JAHHHR000000000

metagenome


Nostocales cyanobacterium

Centralia_MAG_434

JAJPJF000000000

metagenome


Nostocales cyanobacterium

PH2015 10S 36 12

RDXV00000000

metagenome


Oculatella sp.

FACHB-28

JACJPJ000000000


Oculatella sp.

LEGE 6141

JADEWO000000000


Oscillatoria salina

IIICB1

JAAHBQ000000000


Oscillatoria sp.

HE19RPO

JAMXOT000000000



Oscillatoriaceae cyanobacterium

M7585 C2015 266

DVEG00000000

metagenome


Oscillatoriales cyanobacterium

PH2015 11S 45 847

RDXR00000000

metagenome


Oscillatoriales cyanobacterium

PH2015 07U 46 236

RDYN00000000

metagenome


Oscillatoriales cyanobacterium

PH2015 03U 45 708

REAA00000000

metagenome


Oscillatoriales cyanobacterium

PH2015 02U 45 393

REAI00000000

metagenome


Oxynema sp.

CENA135

JAEOXH000000000


Pegethrix bostrychoides

GSE-TBD4-15B

JAHHHV000000000

metagenome


Phormidium sp.

AB48

CP098611



Phormidium sp.

PBR-2020

CP075902

metagenome


Planktothrix agardhii

1810

JAJDMO000000000


Planktothrix agardhii

1813

JAJDMN000000000


Planktothrix agardhii

KL2

JADQCT000000000

metagenome


Pleurocapsa sp.

GA 180221 E-1-1-MAG-40 19

JAIMJS000000000

metagenome


Pseudanabaena sp.

CoA8_M7

JAJTHP000000000

metagenome


Pseudanabaena sp.

M53BS1SP1A06MG

JADBWH000000000

metagenome


Pseudanabaena sp.

M046S1SP1A06QC

JADBWE000000000

metagenome


Pseudanabaena sp.

M38BS1SP1A06MG

JADBWG000000000

metagenome


Pseudanabaena sp.

M34BS1SP1A06MG

JADBWI000000000

metagenome


Raphidiopsis raciborskii

KL1

JADQCS000000000

metagenome


Richelia sinica

FACHB-800

CP021056


Rivularia sp.

IAM M-261

BPQA00000000


Rivularia sp.

T60 A2020 40

JACYMD000000000

metagenome


Romeria aff. gracilis sp.

LEGE 7310

JADEXG000000000


Scytolyngbya sp.

HA4215-MV1

JAHHIA000000000

metagenome


Spirirestis rafaelensis

WJT71-NPBG6

JAHHID000000000

metagenome


Stenomitos rutilans

HA7619-LM2

JAHHIE000000000

metagenome


Symplocastrum torsivum

CPER-KK1

JAHHIF000000000

metagenome


Synechococcus sp.

C9

JALAAD000000000



Synechococcus sp.

Nb3U1

JAKFYQ000000000



Synechococcales cyanobacterium

M55 K2018 4

DVEB00000000

metagenome


Synechococcales cyanobacterium

S06.Bin197

JAABRE000000000

metagenome


Thermosynechococcus sp.

M98_K2018_005

DVEH00000000

metagenome


Thermosynechococcaceae cyanobacterium

MS004

JAKRSB000000000

metagenome


Timaviella obliquedivisa

GSE-PSE-MK23-08B

JAHHII000000000

metagenome


Trichocoleus desertorum

ATA4-8-CV12

JAHHIL000000000

metagenome


Trichocoleus sp.

FACHB-90

JACJOK000000000


Trichodesmium sp.

MAG_R01

JAKQYD000000000

metagenome


Trichodesmium sp.

MAG_R02

JAKQYE000000000

metagenome


Tychonema sp.

LEGE 7196

JADEXB000000000


uncultured cyanobacterium

B-1 bin-000

CAIZKS000000000

metagenome


uncultured cyanobacterium

A5 bin-0177

CAIRPA000000000

metagenome


uncultured Nodularia sp.

LaPlata bin-0263

CAISZL000000000

metagenome


uncultured Nodularia sp.

LaPlata-1m-a bin-391

CAIPYS000000000

metagenome


uncultured Nodularia sp.

LaPlata-b bin-1655

CAIVSM000000000

metagenome


uncultured Nodularia sp.

LaPlata-a bin-2690

CAIWDD000000000

metagenome


uncultured Synechococcales cyanobacterium

AVDCRST MAG81

CADCWO000000000

metagenome


Waterburya agarophytonicola

K14

JADWDC000000000







Duplicate (re-assembled or re-sequenced) genomes:







Aetokthonos hydrillicola

CCALA 1050

JAHHGQ00000000

metagenome


Anabaena sp.

PCC 7122

AP018166


Arthrospira sp.

PCC 8005

CAFN00000000


Brasilonema sp.

UFV-L1

QMEA00000000


Calothrix desertica

PCC 7102

VLKB00000000


Calothrix desertica

PCC 7102

JGI


Chlorogloeopsis fritschii

PCC 6912

RSCJ00000000


Chroococcales cyanobacterium

CENA595

JGI


Chroococcidiopsis sp.

PCC 6712

Gp0005064


Crocosphaera watsonii

WH 3

JGI


Geminocystis herdmanii

PCC 6308

ALVO00000000


Gloeocapsopsis sp.

AAB1

PTJN00000000


Halomicronema hongdechloris

C2206

LAZT00000000


Halomicronema hongdechloris

C2206

CP021983.1


Hormoscilla sp.

GUM202

RFFC00000000.2

metagenome


Limnospira fusiformis

KN01

JACGXW000000000



Limnothrix sp.

CACIAM 69d

MKGP00000000


Lyngbya confervoides

BDU141951

JTHE00000000.1



Lyngbya confervoides

BDU141951

JTHE00000000.3



Lyngbya sp.

CCY 8106=PCC 8106

JGI


Mastigocladus laminosus

UU774

MNPM00000000.2



Microcoleus vaginatus

PCC 9802

JGI



Microcystis aeruginosa

DIANCHI905

AOCI00000000


Microcystis aeruginosa

NIES-88

JXYX00000000


Microcystis aeruginosa

NIES-298

BEIU00000000


Microcystis aeruginosa

NIES-298

BEYQ00000000


Moorea producens

3L

AEPQ00000000


Nodularia spumigena

CCY9414

AAVW00000000


Nostoc punctiforme

PCC 73102

JGI


Nostoc sp.

PCC 7120

RSCN00000000


Nostoc sp.

PCC 7120 FACHB-418

JACJQQ000000000


Oscillatoriales cyanobacterium

JSC-12

AJUB00000000


Phormidesmis priestleyi

ULC007

PVWG00000000


Phormidesmis priestleyi

ULC007

QBMQ00000000


Picosynechococcus sp.

PCC 7002

FXWN00000000


Picosynechococcus sp.

PCC 7002

JAHHPT000000000


Picosynechococcus sp.

PCC 7002

JAHHPU000000000


Planktothrix agardhii

PCC 7805

LR882950



Planktothrix agardhii

PCC 7811

CAJGUZ000000000



Planktothrix agardhii

PCC 9214

LR882970



Planktothrix rubescens

PCC 7821

LR812491

regression


Planktothrix rubescens

PCC 7821

LR882958



Planktothrix serta

PCC 8927

CZCU00000000.1


Planktothrix tepida

PCC 9214

CAJGVA000000000



Planktothrix paucivesiculata

PCC 9631

CZCS00000000.1


Raphidiopsis raciborskii

Cr2010

PVMC00000000



Raphidiopsis raciborskii

CS-505

LYXA00000000


Raphidiopsis raciborskii

CS-506 B

VDFF00000000


Raphidiopsis raciborskii

CS-506 C

VDFE00000000


Raphidiopsis raciborskii

CS-506 D

VDFD00000000


Richelia intracellularis

HH01 AM 2804

OMJX00000000


Richelia sinica

FACHB-800

JACJTT000000000


Scytonema millei

VB511283

JTJC00000000.1


Scytonema millei

VB511283

JTJC00000000.2


Scytonema millei

VB511283

JTJC00000000.3


Scytonema tolypothrichoides

VB-61278

JXCA02000000


Scytonema sp.

HK-05

MRCF00000000


Sphaerospermopsis aphanizomenoides

BCCUSP55

LUFH00000000.2


Spirulina major

PCC 6313

ALVQ00000000


Synechococcus sp.

CB0101

ADXL00000000


Synechococcus elongatus

FACHB-242 UTEX 625 PCC 6301

JACJSY000000000


Synechococcus elongatus

FACHB-805 PCC 7942

JACJTX000000000


Synechococcus elongatus

PCC 6301

CP085785



Synechococcus sp.

P1 UW179A

UCNJ00000000


Synechococcus sp.

PCC 7336

ALWC00000000


Synechococcus sp.

PCC 73109

JGI


Synechococcus sp.

WH 8101

CP047932


Synechocystis sp.

PCC 6803

CP003265


Synechocystis sp.

PCC 6803

JAABOT000000000


Synechocystis sp.

PCC 6803

BA000022


Thermosynechococcus vestitus

PKUAC-SCTE542

CP032152.1


Tolypothrix campylonemoides

VB511288

JXCB00000000.2







Genomes with more than 4000 contigs:






Chrysosporum ovalisporum

UAM-MAO

CDHJ00000000


Phormidium sp.

Bin_1

JAIFKK000000000

metagenome


Unidentified cyanobacterium

13 1 40CM 2 61 4

MNHI00000000



Cyanobacterium

TDX16

NDGV00000000





To prune the tree, removed genomes from clades that are over-represented:


Prochlorococcus:

omitted all (hundreds) genomes derived from single cells; omitted all metagenomes,

strains with accession numbers JAAORC000000000-JAAORO000000000,



PGOQ00000000-PGOY00000000, JAAESY000000000;



Metagenomes of the sister OMF taxa;

Synechococcus/Cyanobium spp.

A10-1-5-1 CP096032 Ace-Pa VITZ00000000 Tous PXXO00000000 CBW1004 CP060397


BS55D PHQT00000000 BS56D PHQU00000000 BSH.1 JALQSQ000000000 HB1133 SDBW0000000


P1 UW179A UCNJ00000000 BIOS-E4-1 CP047935 BOUM118 CP047947 RS9915 CP047934


A15-127 CP047948 A18-25c CP047957 NB0720_10 CP090898 NOUM97013 CP047941 A15-24 CP047960


A15-28 CP047931 A15-44 CP047938 A15-60 CP047933 A15-62 CP047950 A18-40 CP047956


M16-1 CP047954 BMK-MC-1 CP047939 MEDNS5 CP047952 MVIR-18-1 CP047942


PROS-7-1 CP047945 PROS-9-1 CP047961 PROS-U-1 CP047951 ROS8604 CP047946 RS9902 CP047949

RS9907 CP047944 RS9909 CP047943 SYN20 CP047959 TAK9802 CP047937 BIOS-U3-1 CP047936


LA31 CP075523 CCY0621 JAFKRH000000000 CCY9618 JAFKRG000000000 P1 UW105 UCNN00000000


CP7909 JAFKRK000000000 CP7910 JAFKRJ000000000 CP7913 JAFKRI000000000


HK05 JAHRXJ000000000 LEGE 06113 JADEWM000000000 LEGE 06143 JADEWP000000000


MU1651 JAKUHJ000000000 and 58 in the range JAGQAY000000000-JAGQEK000000000;

approx. 500 isolates of S. lacustris




Microcystis:

CACIAM 03 MCIH00000000 DA14 QQWE00000000 DF17 QQWB00000000 TA09 QQWA00000000


TF09 QQWC00000000 TW10 QQWD00000000 PMC 728.11 JADCRC000000000 NIBR18 CP086723


LE3 MT&&00000000 FCY-26 AJHB00000000 FCY-27 AJUS00000000 FCY-28 AJUT00000000


NaRes975 MOLN00000000 CHAOHU MOLZ00000000 46 (JAADAC00000000-JAADBY00000000)


BLCCF108 JACEGB000000000 BLCCF158 JACEGC000000000 KW MVGR00000000


FACHB-1317 JACJQV00000000 FACHB-1342 JACJSV000000000 FACHB-1344 JACJSW000000000


FACHB-917 JACJSZ000000000 LEGE 11464 JADEXM000000000 LEGE 00239 JADEVY000000000


LEGE 00066 JADEVX000000000 LEGE 08355 JADEXI000000000 LEGE 91341 JADEXY000000000


JADBRW000000000-JADBVX000000000 JAJTDD000000000-JAJTDH000000000


52 with accession numbers SFAA-SFCA00000000




Pseudanabaena:

excluded seven with accession numbers JADBVY00000000 to JADBWZ00000000


Planktothrix spp.:




1026 JAKGPC000000000 1027 JAKGPB000000000 1029 JAKGPA000000000 1030 JAKGOZ000000000

1032 JAKGOY000000000 1033 JAKGOX000000000 1801 JAKGOW000000000 1803 JAKGOV000000000

1804 JAKGOU000000000 1805 JAKGOT000000000 1806 JAKGOS000000000 1807 JAKGOR000000000

1811 JAKGOQ000000000 1812 JAKGOP000000000 No. 2A LR882938 No.66 LR882963 No. 82 OW445656

No. 108 LR882941 No. 365 LR882944 No.713 LR882967 No. 758 LR882949 No.976 LR882952



NIVA-CYA126/8 LR882934 LY1 JANDEG000000000




Nostoc:

Nine of the strain Z series: LAGY00000000 LAGZ00000000 LAHB00000000


LAHC00000000 LAHD00000000 LAHE00000000 LAHH00000000 LAHI00000000 LAHJ00000000


and CCNP1411 CP054698 FACHB-87 JACJRX00000000 FACHB-110 JACJRU00000000


FACHB-130 JACJTB00000000 FACHB-159 JACJTU00000000 FACHB-252 JACJTC00000000


FACHB-395 JACJSF00000000 FACHB-857 JACJTK00000000 FACHB-888 JACJQM00000000


FACHB-973 JACJSJ00000000 MG11 JACXXN000000000 WHI WBKM00000000


and 10 with accessions JAIVFQ000000000-JAIVFZ000000000




Fischerella:

Removed 17 almost identical isolates from White Creek Yellowstone NP USA:


NGZS00000000-NGZZ0000000 and NHAA0000000-NHAK0000000 (retaining only strains


WC439 NHAE00000000 and WC441 NHAD00000000) JANBVI000000000




Microcoleus:

49 with accessions JAEQBX000000000 to JAEQDJ000000000 and



JAHRET000000000 to JAHRFD000000000




Others:

60 in the series JAAUON00000000 to JAAUUY000000000

24 (not excluded above) PXPJ00000000 to PXQH00000000

Over 100 genomes of genera with FACHB strain numbers with accessions

JACJNU000000000 to JACJUP000000000; 39 with a SIO designation

Over 30 genomes with a SIO designation containing many mismatches in

the 16S rRNA gene; if this gene is representative of the entire genome

we can have little confidence in the placement of the latter in the tree.