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Incomplete (contain fewer than 79 of 79 core marker genes, a gene being considered |
as present only if the query cover is greater than 40%): |
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Markers |
Candidatus Atelocyanobacterium thalassa |
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ALOHA=UCYN-A1 |
CP001842 |
76 |
Biont of Braarudosphaera bigelowii |
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CPSB-1 |
AP024987 |
77 |
Cyanobacterium sp. |
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uoEpiScrs1 |
OX373462 |
78 |
Desikacharya piscinale |
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CENA21 |
CP012036 |
78 |
Gloeomargarita ahousahtiae |
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VI4D9 |
CP088016 |
78 |
Gloeomargarita lithophora |
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D10 |
CP017675 |
78 |
Leptolyngbya sp. |
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7M |
CP070897 |
72 |
Leptolyngbya sp. |
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15MV |
CP071923 |
66 |
Limnospira fusiformis |
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KN01 |
CP091467 |
78 |
Microcoleus vaginatus |
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PCC 9802 |
CP146622 |
78 |
Nostoc carneum |
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NIES-2107 |
AP018180 |
75 |
Nostoc cf. commune |
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SO-36 |
AP025732 |
78 |
Nostoc linckia |
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NIES-25 |
AP018222 |
47 |
Synechocystis sp. |
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B12 |
CP101709 |
76 |
Thermosynechococcus sp. |
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KatS3mg067 |
AP024678 |
78 |
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Chimeric (segments from two different cyanobacteria), |
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or poor sequences seriously disturbing tree topology: |
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Annamia dubia |
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NIES-4383 |
AP025630 |
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Fischerella sp. |
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NIES-4106 |
AP018298 |
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Halotia branconii |
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CENA392 |
CP124543 |
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Hormoscilla sp. |
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8e647e88 chr. 3 |
OZ001295 |
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Nostoc sp. |
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NIES-2111 |
AP018184 |
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Nostoc commune |
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HK-02 |
AP018326 |
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Planktothrix agardhii |
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976 |
LR882952 |
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Raphidiopsis curvata |
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NIES-932 |
AP018317 |
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Richelia sinica |
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FACHB-800 |
CP021056 |
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Scytonema sp. |
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NIES-4073 |
AP018268 |
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Sphaerospermopsis kisseleviana |
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NIES-73 |
AP018314 |
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Tolypothrix tenuis |
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PCC 7101 |
AP018248 |
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Trichocoleus desertorum |
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NBK24 |
CP116619 |
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Duplicate (re-assembled or re-sequenced) genomes:
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Halomicronema hongdechloris |
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C2206 |
CP021983 |
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Microcoleus vaginatus |
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PCC 9802 |
JGI |
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Microcystis aeruginosa |
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PCC 7806 |
CP130696 |
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Moorena producens |
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JHB |
CP017708.1 |
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Planktothrix agardhii |
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PCC 7805 |
LR882950 |
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Synechococcus elongatus |
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PCC 6301 |
CP085785 |
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Synechococcus sp. |
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WH 8101 |
CP047932 |
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Synechocystis sp. |
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PCC 6803 |
CP003265 |
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Synechocystis sp. |
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PCC 6803 |
BA000022 |
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To prune the tree, removed genomes from clades that are over-represented: |
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Strains of the OMF taxa: |
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A10-1-5-1 (CP096032), A15-127 (CP047948), A18-25c (CP047957), A15-24 (CP047960), A15-44 (CP047938), |
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A15-60 (CP047933), A15-62 (CP047950), A18-40 (CP047956), BIOS-U3-1 (CP047936) |
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BMK-MC-1 (CP047939), M16-1 (CP047954), M30B3 (CP073761), MEDNS5 (CP047952), |
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MVIR-18-1 (CP047942), NB0720_10 (CP090898), |
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NOUM97013 (CP047941), PROS-7-1 (CP047945), PROS-9-1 (CP047961), |
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PROS-U-1 (CP047951), ROS8604 (CP047946), RS9902 (CP047949), RS9907 (CP047944), |
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RS9909 (CP047943), SYN20 (CP047959), TAK9802 (CP047937), CCFWC 502 (CP114977), |
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KAC_102 (OY986434), KAC_105 (OY986432), KAC_106 (OY986433), KAC_114 (OY986430), KAC_108 (OY986431), |
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Prochlorococcus spp.: |
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MIT 0912 (CP114783), MIT 0913 (CP114782), MIT 0915 (CP114781), MIT 0917 (CP114784), |
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MIT 0918 (CP114780), MIT 0919 (CP114779), MIT 1013 (CP114778), MIT 1214 (CP114777), |
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