cyanobacterial phylogeny

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EXCLUDED CHROMOSOMES (COMPLETE)



Incomplete (contain fewer than 79 of 79 core marker genes, a gene being considered

as present only if the query cover is greater than 40%):






Markers

Candidatus Atelocyanobacterium thalassa


ALOHA=UCYN-A1

CP001842

76

Biont of Braarudosphaera bigelowii


CPSB-1

AP024987

77

Desikacharya piscinale


CENA21

CP012036

78

Gloeomargarita lithophora


D10

CP017675

78

Leptolyngbya sp.


7M

CP070897

72

Leptolyngbya sp.


15MV

CP071923

66






Chimeric (segments from two different cyanobacteria),

or poor sequences seriously disturbing tree topology:






Richelia sinica



FACHB-800


CP021056



Duplicate (re-assembled or re-sequenced) genomes:


Anabaena sp.


PCC 7122

AP018166


Synechococcus sp.


WH 8101

CP047932


Synechocystis sp.


PCC 6803

CP003265


Synechocystis sp.


PCC 6803

BA000022




To prune the tree, removed genomes from clades that are over-represented:





Strains of the OMF taxa:




A15-127 (CP047948), A18-25c (CP047957), A15-24 (CP047960), A15-44 (CP047938),

A15-60 (CP047933), A15-62 (CP047950), A18-40 (CP047956), BIOS-U3-1 (CP047936)

BMK-MC-1 (CP047939), M16-1 (CP047954), M30B3 (CP073761), MEDNS5 (CP047952),

Minos11 (CP047953), MVIR-18-1 (CP047942), NS01 (CP047940),

NOUM97013 (CP047941), PROS-7-1 (CP047945), PROS-9-1 (CP047961),

PROS-U-1 (CP047951), ROS8604 (CP047946), RS9902 (CP047949), RS9907 (CP047944),

RS9909 (CP047943), SYN20 (CP047959), TAK9802 (CP047937)