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Incomplete (contain fewer than 79 of 79 core marker genes, a gene being considered |
as present only if the query cover is greater than 40%): |
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Markers |
Candidatus Atelocyanobacterium thalassa |
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ALOHA=UCYN-A1 |
CP001842 |
76 |
Biont of Braarudosphaera bigelowii |
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CPSB-1 |
AP024987 |
77 |
Desikacharya piscinale |
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CENA21 |
CP012036 |
78 |
Gloeomargarita lithophora |
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D10 |
CP017675 |
78 |
Leptolyngbya sp. |
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7M |
CP070897 |
72 |
Leptolyngbya sp. |
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15MV |
CP071923 |
66 |
Limnospira fusiformis |
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KN01 |
CP091467 |
78 |
Nostoc cf. commune |
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SO-36 |
AP025732 |
78 |
Thermomargarita ahousahtiae |
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VI4D9 |
CP088016 |
78 |
Thermosynechococcus sp. |
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KatS3mg067 |
AP024678 |
78 |
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Chimeric (segments from two different cyanobacteria), |
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or poor sequences seriously disturbing tree topology: |
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Richelia sinica |
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FACHB-800 |
CP021056 |
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Woronichinia naegeliana |
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WA131 |
CP073041 |
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Duplicate (re-assembled or re-sequenced) genomes:
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Anabaena sp. |
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PCC 7122 |
AP018166 |
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Microcoleus vaginatus |
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PCC 9802 |
JGI |
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Synechococcus elongatus |
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PCC 6301 |
CP085785 |
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Synechococcus sp. |
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WH 8101 |
CP047932 |
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Synechocystis sp. |
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PCC 6803 |
CP003265 |
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Synechocystis sp. |
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PCC 6803 |
BA000022 |
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To prune the tree, removed genomes from clades that are over-represented: |
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Strains of the OMF taxa: |
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A10-1-5-1 (CP096032), A15-127 (CP047948), A18-25c (CP047957), A15-24 (CP047960), A15-44 (CP047938), |
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A15-60 (CP047933), A15-62 (CP047950), A18-40 (CP047956), BIOS-U3-1 (CP047936) |
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BMK-MC-1 (CP047939), M16-1 (CP047954), M30B3 (CP073761), MEDNS5 (CP047952), |
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MVIR-18-1 (CP047942), NB0720_10 (CP090898), |
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NOUM97013 (CP047941), PROS-7-1 (CP047945), PROS-9-1 (CP047961), |
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PROS-U-1 (CP047951), ROS8604 (CP047946), RS9902 (CP047949), RS9907 (CP047944), |
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RS9909 (CP047943), SYN20 (CP047959), TAK9802 (CP047937) |
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