| EXCLUDED GENOMES (COMPLETE ONLY) | ||||
| Incomplete (contain fewer than 79 of 79 core marker genes, a gene being considered | ||||
| as present only if the query cover is greater than 40%): | ||||
| Marker genes | ||||
| Candidatus Atelocyanobacterium thalassa | ALOHA=UCYN-A1 | CP001842 | 76 | |
| Cyanobiont of Braarudosphaera bigelowii | CPSB-1 | AP024987 | 77 | |
| Desikacharya piscinale | CENA21 | CP012036 | 78 | |
| Gloeomargarita lithophora | D10 | CP017675 | 78 | |
| Leptolyngbya | 7M | CP070897 | (sp.) | 72 |
| Leptolyngbya | 15MV | CP071923 | (sp.) | 66 |
| Chimeric (segments from two different cyanobacteria), | ||||
| or poor sequences seriously disturbing tree topology: | ||||
| Richelia sinica | FACHB-800 | CP021056 | ||
| Duplicate (re-assembled or re-sequenced) genomes: | ||||
| Anabaena | PCC 7122 | AP018166 | (sp.) | |
| Synechococcus | WH 8101 | CP047932 | (sp.) | |
| Synechocystis | PCC 6803 | CP003265 | (sp.) | |
| Synechocystis | PCC 6803 | BA000022 | (sp.) | |
| To prune the tree, removed genomes from clades that are over-represented: | ||||
| Strains of the OMF taxa: | ||||
| A15-127 (CP047948), A18-25c (CP047957), A15-24 (CP047960), A15-44 (CP047938), | ||||
| A15-60 (CP047933), A15-62 (CP047950), A18-40 (CP047956), BIOS-U3-1 (CP047936) | ||||
| BMK-MC-1 (CP047939), M16-1 (CP047954), M30B3 (CP073761), MEDNS5 (CP047952), | ||||
| Minos11 (CP047953), MVIR-18-1 (CP047942), NS01 (CP047940), | ||||
| NOUM97013 (CP047941), PROS-7-1 (CP047945), PROS-9-1 (CP047961), | ||||
| PROS-U-1 (CP047951), ROS8604 (CP047946), RS9902 (CP047949), RS9907 (CP047944), | ||||
| RS9909 (CP047943), SYN20 (CP047959), TAK9802 (CP047937) | ||||