Open the browser search box (press F3 or simultaneously Ctrl+f),
click here to return to top of page.
Open the browser search box (press F3 or simultaneously Ctrl+f),
click here to return to top of page.
|
Incomplete (contain fewer than 79 of 79 core marker genes, a gene being considered |
as present only if the query cover is greater than 40%): |
|
|
|
|
Markers |
Candidatus Atelocyanobacterium thalassa |
|
ALOHA=UCYN-A1 |
CP001842 |
76 |
Biont of Braarudosphaera bigelowii |
|
CPSB-1 |
AP024987 |
77 |
Desikacharya piscinale |
|
CENA21 |
CP012036 |
78 |
Gloeomargarita lithophora |
|
D10 |
CP017675 |
78 |
Leptolyngbya sp. |
|
7M |
CP070897 |
72 |
Leptolyngbya sp. |
|
15MV |
CP071923 |
66 |
Limnospira fusiformis |
|
KN01 |
CP091467 |
78 |
Nostoc cf. commune |
|
SO-36 |
AP025732 |
78 |
Thermomargarita ahousahtiae |
|
VI4D9 |
CP088016 |
78 |
|
|
|
|
|
Chimeric (segments from two different cyanobacteria), |
||||
or poor sequences seriously disturbing tree topology: |
||||
|
|
|
|
|
Richelia sinica
|
|
FACHB-800
|
CP021056
|
|
Duplicate (re-assembled or re-sequenced) genomes:
|
||||
Anabaena sp. |
|
PCC 7122 |
AP018166 |
|
Microcoleus vaginatus |
|
PCC 9802 |
JGI |
|
Synechococcus elongatus |
|
PCC 6301 |
CP085785 |
|
Synechococcus sp. |
|
WH 8101 |
CP047932 |
|
Synechocystis sp. |
|
PCC 6803 |
CP003265 |
|
Synechocystis sp. |
|
PCC 6803 |
BA000022 |
|
To prune the tree, removed genomes from clades that are over-represented: |
|||
|
|
|
|
Strains of the OMF taxa: |
|
|
|
A10-1-5-1 (CP096032), A15-127 (CP047948), A18-25c (CP047957), A15-24 (CP047960), A15-44 (CP047938), |
|||
A15-60 (CP047933), A15-62 (CP047950), A18-40 (CP047956), BIOS-U3-1 (CP047936) |
|||
BMK-MC-1 (CP047939), M16-1 (CP047954), M30B3 (CP073761), MEDNS5 (CP047952), |
|||
MVIR-18-1 (CP047942), NB0720_10 (CP090898), |
|||
NOUM97013 (CP047941), PROS-7-1 (CP047945), PROS-9-1 (CP047961), |
|||
PROS-U-1 (CP047951), ROS8604 (CP047946), RS9902 (CP047949), RS9907 (CP047944), |
|||
RS9909 (CP047943), SYN20 (CP047959), TAK9802 (CP047937) |
|||